ohnosequences!

era7 bioinformatics R&D group

projects

bg7

a bacterial genome annotation system designed for NGS data. Published in PLoS One.

bio4j

UniprotKB + GeneOntology + NCBI taxonomy + RefSeq + Expasy Enzyme, integrated in a graph DB with easy AWS deployment. Manuscript under preparation

statika

A Scala library for working with modules with explicit dependencies, with some specifics for AWS, like declaring and applying immutable EC2 instance configurations.

nispero

A Scala library designed for declaring and scaling stateless inherently parallel computations using AWS

metapasta

a cloud-based metagenomics analysis tool. Manuscript under preparation

scarph

a Scala library for typed graphs: define vertex and edge types, their properties, graph schemas and write type-safe queries over them.