era7 bioinformatics R&D group

Still playing with Gephi and GO (I)

I was wondering the other day how would the whole Gene Ontology look like in Gephi. After realizing that it exporting the ontology to a gexf file could be pretty easy I couldn’t resist to give a try. Soon enough I realized that representing the three sub-ontologies of GO (biological process, cellular component and molecular function) at the same time was kind of too much. So in the end I decided to start with the smallest one (cellular component), and this is what I got.

Click here to open the pdf in a new window.